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@article{Art8,
	Aeres = {ACL},
	Author = {Benyahia, B. and Sari, T. and Cherki, B. and Harmand, J.},
	Doi = {10.1016/j.jprocont.2012.04.012},
	Journal = {Journal of Process Control},
	Number = {6},
	Pages = {1008-1019},
	Title = {Bifurcation and stability analysis of a two step model for monitoring anaerobic digestion processes},
	Ut_Wos = {WOS:000306046800007},
	Volume = {22},
	Year = {2012},
	Bdsk-Url-1 = {http://dx.doi.org/10.1016/j.jprocont.2012.04.012}}

@article{Art9,
	Aeres = {ACL},
	Author = {Benyahia, B. and Sari, T. and Cherki, B. and Harmand, J.},
	Doi = {10.1016/j.cej.2013.05.073},
	Journal = {Chemical Engineering Journal},
	Pages = {1011-1022},
	Title = {Anaerobic Membrane BioReactor modeling in the presence of Soluble Microbial Products ({SMP}) - the Anaerobic Model {AM2b}},
	Volume = {228},
	Year = {2013},
	Bdsk-Url-1 = {http://dx.doi.org/10.1016/j.cej.2013.05.073}}

@article{Art16,
	Aeres = {ACL},
	Author = {Campillo, F. and Champagnat, N.},
	Doi = {10.1016/j.ecolmodel.2012.03.017},
	Journal = {Ecological Modelling},
	Pages = {93-105},
	Title = {Simulation and analysis of an individual-based model for graph-structured plant dynamics},
	Ut_Wos = {WOS:000304636500010},
	Volume = {234},
	Year = {2012},
	Bdsk-Url-1 = {http://dx.doi.org/10.1016/j.ecolmodel.2012.03.017}}

@article{Art18,
	Aeres = {ACL},
	Author = {Campillo, F. and Joannides, M. and Larramendy-Valverde, I.},
	Doi = {10.1016/j.ecolmodel.2011.04.027},
	Journal = {Ecological Modelling},
	Number = {15},
	Pages = {2676-2689},
	Title = {Stochastic modeling of the chemostat},
	Ut_Wos = {WOS:000294105500009},
	Volume = {222},
	Year = {2011},
	Bdsk-Url-1 = {http://dx.doi.org/10.1016/j.ecolmodel.2011.04.027}}

@article{Art19,
	Aeres = {ACL In Press},
	Author = {Campillo, F. and Joannides, M. and Larramendy-Valverde, I.},
	Doi = {10.1016/j.matcom.2013.04.012},
	Journal = {Mathematics and Computers in Simulation},
	Title = {Approximation of the {F}okker-{P}lanck equation of the stochastic chemostat},
	Ut_Wos = {In Press},
	Year = {2013},
	Bdsk-Url-1 = {http://dx.doi.org/10.1016/j.matcom.2013.04.012}}

@article{Art20,
	Aeres = {ACL},
	Author = {Campillo, F. and Lobry, C.},
	Doi = {10.1016/j.ecolmodel.2012.07.015},
	Journal = {Ecological Modelling},
	Pages = {1-10},
	Title = {Effect of population size in a predator-prey model},
	Ut_Wos = {WOS:000310255100001},
	Volume = {246},
	Year = {2012},
	Bdsk-Url-1 = {http://dx.doi.org/10.1016/j.ecolmodel.2012.07.015}}

@article{Art32,
	Aeres = {ACL},
	Author = {Deygout, C. and Lesne, A. and Campillo, F. and Rapaport, A.},
	Doi = {10.1016/j.ecolmodel.2012.10.020},
	Journal = {Ecological Modelling},
	Pages = {15-24},
	Title = {Homogenised model linking microscopic and macroscopic dynamics of a biofilm: Application to growth in a plug flow reactor},
	Ut_Wos = {WOS:000315246100002},
	Volume = {250},
	Year = {2013},
	Bdsk-Url-1 = {http://dx.doi.org/10.1016/j.ecolmodel.2012.10.020}}

@article{Art39,
	Aeres = {ACL},
	Author = {El Hajji, M. and Mazenc, F. and Harmand, J.},
	Doi = {10.3934/mbe.2010.7.641},
	Journal = {Mathematical Biosciences and Engineering},
	Number = {3},
	Pages = {641-656},
	Title = {A mathematical study of a syntrophic relationship of a model of anaerobic digestion process},
	Url = {http://www.ncbi.nlm.nih.gov/pubmed?term=20578790},
	Ut_Wos = {WOS:000278587100009},
	Volume = {7},
	Year = {2010},
	Bdsk-Url-1 = {http://www.ncbi.nlm.nih.gov/pubmed?term=20578790},
	Bdsk-Url-2 = {http://dx.doi.org/10.3934/mbe.2010.7.641}}

@article{Art42,
	Aeres = {ACL},
	Author = {Etienne, R. S. and Haegeman, B.},
	Doi = {10.1007/s12080-010-0076-y},
	Journal = {Theoretical Ecology},
	Number = {1},
	Pages = {87-109},
	Title = {The neutral theory of biodiversity with random fission speciation},
	Ut_Wos = {WOS:000286463900007},
	Volume = {4},
	Year = {2011},
	Bdsk-Url-1 = {http://dx.doi.org/10.1007/s12080-010-0076-y}}

@article{Art43,
	Aeres = {ACL},
	Author = {Etienne, R. S. and Haegeman, B.},
	Doi = {10.1086/667574},
	Journal = {American Naturalist},
	Number = {4},
	Pages = {E75-E89},
	Title = {A conceptual and statistical framework for adaptive radiations with a key role for diversity dependence},
	Ut_Wos = {WOS:000308910600001},
	Volume = {180},
	Year = {2012},
	Bdsk-Url-1 = {http://dx.doi.org/10.1086/667574}}

@article{Art45,
	Aeres = {ACL},
	Author = {Etienne, R. S. and Haegeman, B. and Stadler, T. and Aze, T. and Pearson, P. N. and Purvis, A. and Phillimore, A. B.},
	Doi = {10.1098/rspb.2011.1439},
	Journal = {Proceedings of the Royal Society B-Biological Sciences},
	Number = {1732},
	Pages = {1300-1309},
	Title = {Diversity-dependence brings molecular phylogenies closer to agreement with the fossil record},
	Ut_Wos = {WOS:000300822400007},
	Volume = {279},
	Year = {2012},
	Bdsk-Url-1 = {http://dx.doi.org/10.1098/rspb.2011.1439}}

@article{Art48,
	Aeres = {ACL},
	Author = {Fekih Salem, R. and Harmand, J. and Lobry, C. and Rapaport, A. and Sari, T.},
	Doi = {10.1016/j.jmaa.2012.07.055},
	Journal = {Journal of Mathematical Analysis and Applications},
	Number = {1},
	Pages = {292-306},
	Title = {Extensions of the chemostat model with flocculation},
	Url = {http://www.sciencedirect.com/science/article/pii/S0022247X1200618X},
	Ut_Wos = {WOS:000309381100025},
	Volume = {397},
	Year = {2013},
	Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/S0022247X1200618X},
	Bdsk-Url-2 = {http://dx.doi.org/10.1016/j.jmaa.2012.07.055}}

@article{Art50,
	Aeres = {ACL},
	Author = {Fekih Salem, R. and Sari, T. and Abdellatif, N.},
	Journal = {ARIMA},
	Pages = {15-30},
	Title = {Sur un mod{\`e}le de comp{\'e}tition et de coexistence dans le chemostat},
	Volume = {14},
	Year = {2011}}

@article{Art51,
	Aeres = {ACL},
	Author = {Gajardo, P. and Harmand, J. and Ramirez, H. and Rapaport, A.},
	Doi = {10.1016/j.automatica.2011.03.001},
	Journal = {Automatica},
	Number = {8},
	Pages = {1764-1769},
	Title = {Minimal time bioremediation of natural water resources},
	Ut_Wos = {WOS:000295344600025},
	Volume = {47},
	Year = {2011},
	Bdsk-Url-1 = {http://dx.doi.org/10.1016/j.automatica.2011.03.001}}

@article{Art70,
	Aeres = {ACL},
	Author = {Haegeman, B. and Etienne, R. S.},
	Doi = {10.1086/650718},
	Journal = {American Naturalist},
	Number = {4},
	Pages = {E74-E90},
	Title = {Entropy maximization and the spatial distribution of species},
	Url = {http://www.ncbi.nlm.nih.gov/pubmed?term=20166816},
	Ut_Wos = {WOS:000275167100010},
	Volume = {175},
	Year = {2010},
	Bdsk-Url-1 = {http://www.ncbi.nlm.nih.gov/pubmed?term=20166816},
	Bdsk-Url-2 = {http://dx.doi.org/10.1086/650718}}

@article{Art71,
	Aeres = {ACL},
	Author = {Haegeman, B. and Etienne, R. S},
	Doi = {10.1103/PhysRevE.81.031911},
	Journal = {Physical Review E Statistical Nonlinear and Soft Matter Physics},
	Number = {3},
	Pages = {13 p.},
	Title = {Self-consistent approach for neutral community models with speciation},
	Ut_Wos = {WOS:000276199300094},
	Volume = {81},
	Year = {2010},
	Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevE.81.031911}}

@article{Art72,
	Aeres = {ACL},
	Author = {Haegeman, B. and Etienne, R. S.},
	Doi = {10.1111/j.1600-0706.2011.19697.x},
	Journal = {Oikos},
	Number = {7},
	Pages = {961 963},
	Title = {Independent species in independent niches behave neutrally},
	Ut_Wos = {WOS:000292114300001},
	Volume = {120},
	Year = {2011},
	Bdsk-Url-1 = {http://dx.doi.org/10.1111/j.1600-0706.2011.19697.x}}

@article{Art74,
	Aeres = {ACL},
	Author = {Haegeman, B. and Loreau, M.},
	Doi = {10.1016/j.jtbi.2010.10.006},
	Journal = {Journal of Theoretical Biology},
	Number = {1},
	Pages = {150-165},
	Title = {A mathematical synthesis of niche and neutral theories in community ecology},
	Ut_Wos = {WOS:000286173000016},
	Volume = {269},
	Year = {2011},
	Bdsk-Url-1 = {http://dx.doi.org/10.1016/j.jtbi.2010.10.006}}

@article{Art76,
	Aeres = {ACL},
	Author = {Haegeman, B. and Weitz, Joshua S.},
	Doi = {10.1186/1471-2164-13-196},
	Journal = {BMC Genomics},
	Number = {196},
	Pages = {15 p.},
	Title = {A neutral theory of genome evolution and the frequency distribution of genes},
	Ut_Wos = {WOS:000305791400001 PMID: 22613814},
	Volume = {13},
	Year = {2012},
	Bdsk-Url-1 = {http://dx.doi.org/10.1186/1471-2164-13-196}}

@article{Art77,
	Aeres = {ACL},
	Author = {Haidar, I. and Gerard, F. and Rapaport, A.},
	Journal = {Computational Ecology and Software},
	Pages = {224-239},
	Title = {Comparison of numerical simulations of reactive transport and chemostat-like models},
	Volume = {1},
	Year = {2011}}

@article{Art78,
	Aeres = {ACL},
	Author = {Haidar, I. and Rapaport, A. and Gerard, F.},
	Doi = {10.3934/mbe.2011.8.953},
	Journal = {Mathematical Biosciences and Engineering},
	Pages = {953-971},
	Title = {Effects of spatial structure and diffusion on the performances of the chemostat},
	Volume = {8},
	Year = {2011},
	Bdsk-Url-1 = {http://dx.doi.org/10.3934/mbe.2011.8.953}}

@article{Art85,
	Aeres = {ACL},
	Author = {Jerry, M. and Raissi, N. and Rapaport, A.},
	Journal = {JP Journal of Applied Mathematics},
	Number = {1},
	Pages = {41-60},
	Title = {A viability analysis for an explicit inshore-offshore model},
	Volume = {1},
	Year = {2011}}

@article{Art86,
	Aeres = {ACL},
	Author = {Jerry, M. and Rapaport, A. and Cartigny, P.},
	Doi = {10.1016/j.nonrwa.2009.01.042},
	Journal = {Nonlinear Analysis : Real World Applications},
	Number = {2},
	Pages = {720-734},
	Title = {Can protected areas potentially enlarge viability domains for harvesting management ?},
	Ut_Wos = {WOS:000273101100011},
	Volume = {11},
	Year = {2010},
	Bdsk-Url-1 = {http://dx.doi.org/10.1016/j.nonrwa.2009.01.042}}

@article{Art88,
	Aeres = {ACL},
	Author = {Kislyuk, A. O. and Haegeman, B. and Bergman, N. H. and Weitz, J. S.},
	Doi = {10.1186/1471-2164-12-32},
	Journal = {BMC Genomics},
	Number = {32},
	Pages = {10 p.},
	Title = {Genomic fluidity : an integrative view of gene diversity within microbial populations},
	Ut_Wos = {WOS:000286655900001},
	Volume = {12},
	Year = {2011},
	Bdsk-Url-1 = {http://dx.doi.org/10.1186/1471-2164-12-32}}

@article{Art91,
	Aeres = {ACL},
	Author = {Lakrib, M. and Sari, T.},
	Journal = {Electronic Journal of Differential Equations},
	Number = {40},
	Pages = {1-24},
	Title = {Time averaging for ordinary differential equations and retarded functional differential equations},
	Ut_Wos = {WOS:000208198900001},
	Volume = {2010},
	Year = {2010}}

@article{Art101,
	Aeres = {ACL},
	Author = {Mabrouk, N. and Deffuant, G. and Tolker Nielsen, T. and Lobry, C.},
	Journal = {Theory in Biosciences},
	Number = {1},
	Pages = {1-13},
	Title = {Bacteria can form interconnected microcolonies when a self-excreted product reduces their surface motility: evidence from individual-based model simulations},
	Ut_Wos = {WOS:000278527100001},
	Volume = {129},
	Year = {2010}}

@article{Art105,
	Aeres = {ACL},
	Author = {Martinet, V. and Th{\'e}baud, O. and Rapaport, A.},
	Doi = {10.1007/s10666-010-9226-2},
	Journal = {Environmental Modeling and Assessment},
	Number = {6},
	Pages = {503-517},
	Title = {Hare or tortoise? Trade-offs in recovering sustainable bioeconomic systems},
	Ut_Wos = {WOS:000283368200005},
	Volume = {15},
	Year = {2010},
	Bdsk-Url-1 = {http://dx.doi.org/10.1007/s10666-010-9226-2}}

@article{Art107,
	Aeres = {ACL},
	Author = {Mazenc, F. and Bernard, O.},
	Journal = {IEEE Transactions on Automatic Control},
	Number = {2},
	Pages = {523-527},
	Title = {Asymptotically stable interval observers for planar systems with complex poles},
	Url = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?\&GWVersion=2\&SrcAuth=INRA\&SrcApp=INRA\&DestLinkType=FullRecord\&DestApp=WOS\&KeyUT=000274383400029},
	Ut_Wos = {WOS:000274383400029},
	Volume = {55},
	Year = {2010},
	Bdsk-Url-1 = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?%5C&GWVersion=2%5C&SrcAuth=INRA%5C&SrcApp=INRA%5C&DestLinkType=FullRecord%5C&DestApp=WOS%5C&KeyUT=000274383400029}}

@article{Art109,
	Aeres = {ACL},
	Author = {Mazenc, F. and Malisoff, M.},
	Doi = {10.1109/tac.2010.2041995},
	Journal = {IEEE Transactions on Automatic Control},
	Number = {4},
	Pages = {841-854},
	Title = {Strict {L}yapunov Function Constructions Under LaSalle Conditions with an Application to {L}otka-{V}olterra Systems},
	Ut_Wos = {WOS:000276251300003},
	Volume = {55},
	Year = {2010},
	Bdsk-Url-1 = {http://dx.doi.org/10.1109/tac.2010.2041995}}

@article{Art115,
	Aeres = {ACL},
	Author = {Mazouni, D. and Harmand, J. and Rapaport, A. and Hammouri, H.},
	Doi = {10.1002/oca.905},
	Journal = {Optimal Control, Applications and Methods},
	Number = {4},
	Pages = {289-301},
	Title = {Optimal time switching control for multi-reaction batch process},
	Ut_Wos = {WOS:000280687600001},
	Volume = {31},
	Year = {2010},
	Bdsk-Url-1 = {http://dx.doi.org/10.1002/oca.905}}

@article{Art123,
	Aeres = {ACL},
	Author = {Ranjard, L. and Dequiedt, S. and Jolivet, C. and Saby, N. and T., Jean and Harmand, J. and Loisel, P. and Rapaport, A. and Fall, S. and Simonet, P. and Joffre, R. and Chemidlin, N. and Maron, P.-A. and Mougel, C. and Martin, M. and Toutain, B. and Arrouays, D. and Lemanceau, P.},
	Doi = {10.1051/agro/2009033},
	Journal = {Agronomy for Sustainable Development},
	Number = {2},
	Pages = {359 - 365},
	Title = {Biogeography of soil microbial communities: a review and a description of the ongoing french national initiative},
	Ut_Wos = {WOS:000276769800010},
	Volume = {30},
	Year = {2010},
	Bdsk-Url-1 = {http://dx.doi.org/10.1051/agro/2009033}}

@article{Art124,
	Aeres = {ASCL},
	Author = {Rapaport, A.},
	Journal = {Lettre d'Informations Inra},
	Title = {Biophysique : le sol est-il un bior{\'e}acteur?},
	Volume = {Inra - Actualit{\'e} Chercheurs, {\'e}tudiant, La Mod{\'e}lisation Est Partout},
	Year = {2013}}

@article{Art125,
	Aeres = {ACL},
	Author = {Rapaport, A. and Dochain, D.},
	Doi = {10.1109/tac.2011.2159424},
	Journal = {IEEE Transactions on Automatic Control},
	Pages = {2671-2676},
	Title = {Minimal time control of fed-batch processes with growth functions having several maxima},
	Volume = {56},
	Year = {2011},
	Bdsk-Url-1 = {http://dx.doi.org/10.1109/tac.2011.2159424}}

@article{Art132,
	Aeres = {ACL},
	Author = {Rouyer, J. and Sari, T.},
	Doi = {10.1515/advgeom.2011.030},
	Journal = {Advances in Geometry},
	Number = {1},
	Pages = {43-61},
	Title = {As many antipodes as vertices on some convex polyhedra},
	Ut_Wos = {WOS:000300857300004},
	Volume = {12},
	Year = {2012},
	Bdsk-Url-1 = {http://dx.doi.org/10.1515/advgeom.2011.030}}

@article{Art133,
	Aeres = {ACL},
	Author = {Sari, T.},
	Doi = {10.1016/j.mcm.2010.07.010},
	Journal = {Mathematical and Computer Modelling},
	Number = {9-10},
	Pages = {1822-1824},
	Title = {Comments on Limit cycles in the chemostat with constant yields , Mathematical and Computer Modelling 45 (2007) 927-932},
	Ut_Wos = {WOS:000281354400044},
	Volume = {52},
	Year = {2010},
	Bdsk-Url-1 = {http://dx.doi.org/10.1016/j.mcm.2010.07.010}}

@article{Art134,
	Aeres = {ACL},
	Author = {Sari, T.},
	Doi = {10.1016/j.crma.2010.06.008},
	Journal = {Comptes Rendus Math{\'e}matique},
	Number = {13-14},
	Pages = {747-751},
	Title = {A {L}yapunov function for the chemostat with variable yields},
	Ut_Wos = {WOS:000280671400011},
	Volume = {348},
	Year = {2010},
	Bdsk-Url-1 = {http://dx.doi.org/10.1016/j.crma.2010.06.008}}

@article{Art135,
	Aeres = {ACL},
	Author = {Sari, T. and El Hajji, M. and Harmand, J.},
	Doi = {10.3934/mbe.2012.9.627},
	Journal = {Mathematical Biosciences and Engineering},
	Number = {3},
	Pages = {627-645},
	Title = {The mathematical analysis of a syntrophic relationship between two microbial species in a chemostat},
	Ut_Wos = {WOS:000307828300008},
	Volume = {9},
	Year = {2012},
	Bdsk-Url-1 = {http://dx.doi.org/10.3934/mbe.2012.9.627}}

@article{Art136,
	Aeres = {ACL},
	Author = {Sari, T. and Mazenc, F.},
	Doi = {10.3934/mbe.2011.8.827},
	Journal = {Mathematical Biosciences and Engineering},
	Number = {3},
	Pages = {827 840},
	Title = {Global dynamics of the chemostat with different removal rates and variable yields},
	Url = {http://www.ncbi.nlm.nih.gov/pubmed?term=21675813},
	Ut_Wos = {WOS:000293623800012},
	Volume = {8},
	Year = {2011},
	Bdsk-Url-1 = {http://www.ncbi.nlm.nih.gov/pubmed?term=21675813},
	Bdsk-Url-2 = {http://dx.doi.org/10.3934/mbe.2011.8.827}}

@article{Art137,
	Aeres = {ACL In Press},
	Author = {Sieber, J. and Rapaport, A. and Rodrigues, S. and Desroches, M.},
	Doi = {10.1007/s00449-013-0912-8},
	Journal = {Bioprocess and Biosystems Engineering},
	Title = {A method for the reconstruction of unkwnown non-monotonic growth functions in the chemostat},
	Year = {2013},
	Bdsk-Url-1 = {http://dx.doi.org/10.1007/s00449-013-0912-8}}

@article{Art141,
	Aeres = {ACL},
	Author = {Van Groenendael, J. and Mony, C. and Garbey, M. and Campillo, F. and El Hamidi, A.},
	Doi = {10.1016/j.ecolmodel.2012.03.013},
	Journal = {Ecological Modelling},
	Pages = {1--2},
	Title = {Introduction to the special issue of {E}cological {M}odelling "{M}odelling clonal plant growth: from ecological concepts to mathematics"},
	Url = {http://www.sciencedirect.com/science/article/pii/S0304380012001202},
	Ut_Wos = {WOS:000304636500001},
	Volume = {234},
	Year = {2012},
	Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/S0304380012001202},
	Bdsk-Url-2 = {http://dx.doi.org/10.1016/j.ecolmodel.2012.03.013}}

@article{Art142,
	Aeres = {ACL},
	Author = {Vanpeteghem, D. and Haegeman, B.},
	Doi = {10.1007/s00285-009-0303-6},
	Journal = {Journal of Mathematical Biology},
	Number = {3},
	Pages = {323-357},
	Title = {An analytical approach to spatio-temporal dynamics of neutral community models},
	Ut_Wos = {WOS:000279085400001},
	Volume = {61},
	Year = {2010},
	Bdsk-Url-1 = {http://dx.doi.org/10.1007/s00285-009-0303-6}}

@article{Art159,
	Aeres = {ACL},
	Author = {Bayen, T. and Mairet, F.},
	Doi = {10.1007/s00449-013-0911-9},
	Journal = {Bioprocess and Biosystems Engineering},
	Title = {Minimal time control of fed-batch bioreactor with product inhibition},
	Year = {2013},
	Bdsk-Url-1 = {http://dx.doi.org/10.1007/s00449-013-0911-9}}

@article{Art160,
	Aeres = {ACL},
	Author = {Haegeman, B. and Hamelin, J. and Moriarty, John and Neal, Peter and Dushoff, Jonathan and Weitz, Joshua S.},
	Journal = {The ISME Journal},
	Pages = {1--10},
	Title = {Robust estimation of microbial diversity in theory and in practice},
	Year = {2013}}

@article{Art161,
	Aeres = {ACL In Press},
	Author = {Montseny, E. and Casenave, C..},
	Journal = {Journal of Vibration and Control},
	Title = {Analysis, simulation and impedance operator of a nonlocal model of porous medium for acoustic control.},
	Year = {2013}}

@article{Art162,
	Aeres = {ACL In Press},
	Author = {Haegeman, B. and Sari, T. and Etienne, R.},
	Journal = {J. Math. Biol},
	Title = {Predicting coexistence of plants subject to a tolerance-competition trade-off},
	Year = {2013}}

@article{Art163,
	Aeres = {ACL In Press},
	Author = {Bouhafs, W. and Abdellatif, N. and Jean, F. and Harmand, J.},
	Journal = {ARIMA},
	Title = {Commande optimale en temps minimal d'un proc{\'e}d{\'e} biologique d'{\'e}puration de l'eau},
	Year = {2013}}

@article{Art164,
	Aeres = {ACL},
	Author = {Sari, T.},
	Journal = {Acta Applicandae Mathematicae},
	Pages = {201--219},
	Title = {Competitive Exclusion for Chemostat Equations with Variable Yields},
	Volume = {123},
	Year = {2013}}

@article{Art165,
	Aeres = {ACL},
	Author = {Charfi, A. and Benamar, N. and Harmand, J.},
	Journal = {Water Research},
	Pages = {2637-2650},
	Title = {Analysis of fouling mechanisms in anaerobic membrane bioreactors},
	Volume = {46},
	Year = {2012}}

@article{Art166,
	Aeres = {ACL In Press},
	Author = {Fekih-Salem, R. and Abdellatif, N. and Sari, T. and Harmand, J{\'e}r\^{o}me},
	Journal = {ARIMA},
	Title = {Analyse math{\'e}matique d'un mod{\`e}le de digestion ana{\'e}robie {\`a} trois {\'e}tapes},
	Year = {2013}}
		 
		 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
		 
		 
%%%%%%%%%%%%%%%%%% articles or chapters in books
		 
		 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
		 
		 
		 

@inbook{Inbook2,
	Aeres = {OS},
	Author = {Lobry, C. and Sari, T. and Yadi, Karim},
	Pages = {309-322},
	Series = {Advances in the Theory of Control, Signals and Systems with Physical Modeling, J. L{\'e}vine and P. Mullhaupt (Editors) Lecture Notes in Control and Information Sciences},
	Title = {Coexistence of three predators competing for a single biotic resource},
	Volume = {407},
	Year = {2011}}

@inbook{Inbook4,
	Aeres = {OS},
	Author = {Ranjard, L. and Dequiedt, S. and Jolivet, C. and Saby, N. and Thioulouse, J. and Harmand, J. and Loisel, P. and Rapaport, A. and Fall, S. and Simonet, P. and Joffre, R. and Chemidlin, N. and Maron, P.-A. and Mougel, C. and Martin, M. and Toutain, B. and Arrouays, D. and Lemanceau, P.},
	Pages = {857-865},
	Series = {Sustainable Agriculture Volume 2},
	Title = {Biogeography of soil microbial communities: a review and a description of the ongoing french national initiative},
	Year = {2011}}

@inbook{Inbook6,
	Aeres = {OS},
	Author = {Lobry, C.},
	Pages = {119--187},
	Series = {Des Nombres et des Mondes, E. Benoit (Editeur), Herman},
	Title = {La comp{\'e}tition dans le ch{\'e}mostat},
	Year = {2013}}
		 
		 
		 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
		 
		 
%%%%%%%%%%%%%%%%%% preprints
		 
		 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%		 
		 

@unpublished{Draft2,
	Aeres = {Preprint},
	Author = {Bayen, T. and Rapaport, A. and Sebbah, M.},
	Note = {hal-00798651},
	Title = {Optimal synthesis for a minimum time problem in the plane with a triangle control set},
	Url = {http://hal.inria.fr/hal-00798651},
	Year = {2013},
	Bdsk-Url-1 = {http://hal.inria.fr/hal-00798651}}

@unpublished{Draft3,
	Aeres = {Preprint},
	Author = {Campillo, F. and Joannides, M.},
	Date-Modified = {2013-09-04 07:38:51 +0000},
	Note = {inria-00502559},
	Title = {A spatially explicit {Markovian} individual-based model for terrestrial plant dynamics},
	Url = {http://hal.inria.fr/inria-00502559},
	Year = {2010},
	Bdsk-Url-1 = {http://hal.inria.fr/inria-00502559}}

@unpublished{Draft4,
	Aeres = {Preprint},
	Author = {Campillo, F. and Lobry, C.},
	Date-Modified = {2013-09-04 07:40:00 +0000},
	Note = {hal-00800370},
	Title = {L'effet de la migration dans la relation ressource-consommateur du point de vue de ``l'atto-fox problem''},
	Url = {http://hal.inria.fr/hal-00800370},
	Year = {2013},
	Bdsk-Url-1 = {http://hal.inria.fr/hal-00800370}}

@unpublished{Draft5,
	Aeres = {Preprint},
	Author = {Deygout, C. and Lesne, A. and Campillo, F. and Rapaport, A.},
	Note = {hal-00604377},
	Title = {A multiscale approach for biofilm modelling: application for growth in a plug flow reactor},
	Url = {http://hal.inria.fr/hal-00604377},
	Year = {2011},
	Bdsk-Url-1 = {http://hal.inria.fr/hal-00604377}}

@unpublished{Draft9,
	Aeres = {Preprint},
	Author = {Rapaport, A. and Haidar, I. and Harmand, J.},
	Note = {hal-00766243},
	Title = {The buffered chemostat with non-monotonic response functions},
	Url = {http://hal.inria.fr/hal-00766243},
	Year = {2012},
	Bdsk-Url-1 = {http://hal.inria.fr/hal-00766243}}

@unpublished{Draft10,
	Aeres = {Preprint},
	Author = {Rapaport, A. and Sieber, J. and Rodrigues, S. and Desroches, M.},
	Note = {hal-00787510},
	Title = {Extremum seeking via continuation techniques for optimizing biogas production in the chemostat},
	Url = {http://hal.inria.fr/hal-00787510},
	Year = {2013},
	Bdsk-Url-1 = {http://hal.inria.fr/hal-00787510}}

@unpublished{Draft12,
	Aeres = {Preprint},
	Author = {Bayen, T. and Mairet, F.},
	Note = {hal-00817147},
	Title = {Optimization of the separation of two species in a chemostat},
	Url = {http://hal.inria.fr/hal-00817147},
	Year = {2013},
	Bdsk-Url-1 = {http://hal.inria.fr/hal-00817147}}

@unpublished{Draft13,
	Aeres = {Preprint},
	Author = {Bayen, T. and Mairet, F. and Mazade, M.},
	Note = {hal-00759058},
	Title = {Optimal feeding strategy for the minimal time problem of a fed-batch bioreactor with mortality rate},
	Url = {http://hal.inria.fr/hal-00759058},
	Year = {2013},
	Bdsk-Url-1 = {http://hal.inria.fr/hal-00759058}}

@unpublished{Draft15,
	Aeres = {Preprint},
	Author = {Campillo, F. and Fritsch, C.},
	Note = {hal-00850959, version 2},
	Title = {A mass-structured individual-based model of the chemostat: convergence and simulation},
	Url = {http://hal.inria.fr/hal-00850959},
	Year = {2013},
	Bdsk-Url-1 = {http://hal.inria.fr/hal-00850959}}

@unpublished{Draft17,
	Aeres = {Preprint},
	Author = {Campillo, F. and Joannides, M. and Larramendy-Valverde, I.},
	Date-Modified = {2013-09-04 07:39:24 +0000},
	Note = {hal-00644250},
	Title = {{Approximation of the {Fokker-Planck} equation of the stochastic chemostat}},
	Url = {http://hal.inria.fr/hal-00644250},
	Year = {2011},
	Bdsk-Url-1 = {http://hal.inria.fr/hal-00644250}}

@unpublished{Draft18,
	Aeres = {Preprint},
	Author = {Campillo, F. and Joannides, M. and Larramendy-Valverde, I.},
	Note = {hal-00842291},
	Title = {{Estimation of the parameters of a stochastic logistic growth model}},
	Url = {http://hal.inria.fr/hal-00842291},
	Year = {2013},
	Bdsk-Url-1 = {http://hal.inria.fr/hal-00842291}}

@unpublished{Draft19,
	Aeres = {Preprint},
	Author = {Campillo, F. and Lobry, C.},
	Note = {hal-00645619},
	Title = {{Effect of population size in a Prey-Predator model}},
	Url = {http://hal.inria.fr/hal-00645619},
	Year = {2011},
	Bdsk-Url-1 = {http://hal.inria.fr/hal-00645619}}
		 
		 
@unpublished{Draft20,
	Aeres = {Preprint},
	Author = {Campillo, F. and Lobry, C.},
	Date-Added = {2013-09-04 08:21:04 +0000},
	Date-Modified = {2013-09-04 08:21:28 +0000},
	Note = {hal-00841986},
	Title = {{Le ch{\'e}mostat IBM}},
	Url = {http://hal.inria.fr/hal-00841986},
	Year = {2010},
	Bdsk-Url-1 = {http://hal.inria.fr/hal-00800370}}		 
		 
		 
		 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
		 
		 
%%%%%%%%%%%%%%%%%% proceedings
		 
		 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%		 
		 

@inproceedings{Proc8,
	Aeres = {C-ACTI},
	Author = {Bello Rivas, J. M. and Harmand, J. and Ivorra, B. and Ramos del Olmo, A. M. and Rapaport, A.},
	Booktitle = {7{\`e}me STIC \& Environnement 2011},
	Pages = {344},
	Publisher = {Transvalor - Presses des Mines},
	Title = {Bioreactor shape optimisation. Modeling, simulation, and shape optimization of a simple bioreactor for water treatment},
	Year = {2011}}

@inproceedings{Proc9,
	Aeres = {C-ACTI},
	Author = {Benyahia, B. and Sari, T. and Cherki, B. and Harmand, J.},
	Booktitle = {11th International Symposium on Computer Applications in Biotechnology (CAB 2010)},
	Editor = {Julio, R. Banga and Philippe, Bogaerts and Jan Van, Impe and D., Dochain and Ilse, Smets},
	Pages = {371-376},
	Publisher = {International Federation of Automatic Control},
	Title = {Equilibria of an anaerobic wastewater treatment process and their stability},
	Year = {2010}}

@inproceedings{Proc10,
	Aeres = {C-ACTI},
	Author = {Benyahia, B. and Sari, T. and Cherki, B. and Harmand, J.},
	Booktitle = {CARI'10 Colloque Africain sur la Recherche en Informatique et en Math{\'e}matiques Appliqu{\'e}es},
	Pages = {453--460},
	Title = {Sur le mod{\`e}le {AM2} de digestion ana{\'e}robie},
	Url = {http://www.cari-info.org/arch_actes_cari2010.htm},
	Year = {2010},
	Bdsk-Url-1 = {http://www.cari-info.org/arch_actes_cari2010.htm}}

@inproceedings{Proc11,
	Aeres = {C-ACTI},
	Author = {Benyahia, B. and Sari, T. and Cherki, B. and Harmand, J.},
	Booktitle = {5{\`e}me Colloque sur les Tendances dans les Applications Math{\'e}matiques en Tunisie, Alg{\'e}rie, Maroc},
	Pages = {465-470},
	Series = {TAMTAM'11},
	Title = {Mod{\'e}lisation math{\'e}matique d'un bior{\'e}acteur membranaire ana{\'e}robie},
	Year = {2011}}

@inproceedings{Proc12,
	Aeres = {C-ACTI},
	Author = {Benyahia, B. and Sari, T. and Harmand, J. and Cherki , B.},
	Booktitle = {18th IFAC World Congress, Milano (Italy), August 28 - September 2},
	Pages = {3789-3794},
	Publisher = {IFAC},
	Series = {World Congress},
	Title = {Modeling of the Soluble Microbial Products ({SMP}) in Anaerobic Membrane BioReactors ({AMBR}) : Equilibria and stability of the {AM2b} model},
	Year = {2011}}

@inproceedings{Proc17,
	Aeres = {C-COM},
	Author = {Campillo, F. and Champagnat, N.},
	Booktitle = {7th International Congress on Industrial and Applied Mathematics (ICIAM 2011)},
	Date-Modified = {2013-09-04 07:38:58 +0000},
	Title = {Simulation and Analysis of a {Markovian} Individual-Based Model for Clonal Plant Dynamics},
	Year = {2011}}

@inproceedings{Proc18,
	Aeres = {C-COM},
	Author = {Campillo, F. and Champagnat, N. and Mony, C.},
	Booktitle = {54. Symposium of the International Association for Vegetation Science (IAVS 2011)},
	Title = {Monte Carlo simulation and mathematical analysis of an individual-based model for clonal plant dynamics},
	Year = {2011}}

@inproceedings{Proc23,
	Aeres = {C-ACTI},
	Author = {Campillo, F. and Joannides, M.},
	Booktitle = {CARI'10, Proceedings of the 10th International African Conference on Research in Computer Science and Applied mathematics, October 18--21, Yamoussoukro, C{\^o}te d'Ivoire},
	Date-Modified = {2013-09-04 07:44:07 +0000},
	Pages = {110-118},
	Title = {Mod{\`e}les logistiques d{\'e}terministes et stochastiques},
	Year = {2010}}

@inproceedings{Proc24,
	Aeres = {C-ACTI},
	Author = {Campillo, F. and Joannides, M. and Larramendy-Valverde, I.},
	Booktitle = {MAMERN11: 4th International Conference on Approximation Methods and Numerical Modelling in Environment and Natural Resources Saidia (Morocco) May 23-26},
	Title = {Stochastic models for the chemostat},
	Year = {2011}}

@inproceedings{Proc25,
	Aeres = {C-COM},
	Author = {Campillo, F. and Joannides, M. and Larramendy-Valverde, I.},
	Booktitle = {7th International Congress on Industrial and Applied Mathematics (ICIAM) 2011},
	Title = {Stochastic models for the chemostat},
	Year = {2011}}

@inproceedings{Proc28,
	Aeres = {C-ACTI},
	Author = {Casenave, C. and Dochain, D. and Alvarez, G. and Arellano, M. and Benkhelifa, H. and Leducq, D.},
	Booktitle = {9th IFAC Symposium on Nonlinear Control Systems (NOLCOS)},
	Title = {Control of a nonlinear ice cream crystallization process},
	Year = {2013}}

@inproceedings{Proc29,
	Aeres = {C-ACTI},
	Author = {Casenave, C. and Dochain, D. and Alvarez, G. and Benkhelifa, H. and Flick, D. and Leducq, D.},
	Booktitle = {2012 ACC : American Control Conference},
	Pages = {6 p.},
	Title = {Steady-state and stability analysis of a population balance based nonlinear ice cream crystallization model},
	Year = {2012}}

@inproceedings{Proc42,
	Aeres = {C-COM},
	Author = {Deygout, C. and Lesne, A. and Campillo, F. and Rapaport, A},
	Booktitle = {Colloque Ecologie, Montpellier},
	Title = {Une approche originale pour la mod{\'e}lisation des biofilms, ou un aller-retour entre {IBM} et {EDO}},
	Year = {2010}}

@inproceedings{Proc43,
	Aeres = {C-ACTI},
	Author = {Diagne, M. L. and N'diaye, P. I. and Sari, T. and Niane, M. T.},
	Booktitle = {10{\`e}me Colloque Africain sur la Recherche en Informatique et en Math{\'e}matiques Appliqu{\'e}es (CARI'10), E. Badouel, A. Sbihi and I. Lokpo (Editors), INRIA},
	Pages = {277-284},
	Title = {Un mod{\`e}le math{\'e}matique de la prolif{\'e}ration du Typha},
	Url = {http://www.cari-info.org/arch_actes_cari2010.htm},
	Year = {2010},
	Bdsk-Url-1 = {http://www.cari-info.org/arch_actes_cari2010.htm}}

@inproceedings{Misc13,
	Aeres = {C-ACTI},
	Author = {Dochain, D. and De Leenheer, P. and Rapaport, A.},
	Booktitle = {Mathmod 2012 : 7. Vienna conference on mathematical modelling},
	Pages = {12 p.},
	Title = {About transgressive over-yielding in the chemostat},
	Year = {2012}}

@inproceedings{Proc47,
	Aeres = {C-COM},
	Author = {El Hajji, M. and Ranjard, L. and Rapaport, A. and Maron, P.-A. and Harmand, J.},
	Booktitle = {3th Conf{\'e}rence Internationale de la SFBT},
	Title = {How optical density measurements on artificially reconstituted soil ecosystems show the validity of the competitive exclusion principle},
	Year = {2010}}

@inproceedings{Proc48,
	Aeres = {C-COM},
	Author = {El Hajji, M. and Rapaport, A.},
	Booktitle = {3th Conf{\'e}rence Internationale de la SFBT},
	Pages = {n.p.},
	Title = {Reversible inhibition excluses the coexistence at continuous culture},
	Year = {2010}}

@inproceedings{Proc49,
	Aeres = {C-ACTI},
	Author = {El Hajji, M. and Sari, T. and Harmand, J.},
	Booktitle = {5{\`e}me Colloque sur les Tendances dans les Applications Math{\'e}matiques en Tunisie, Alg{\'e}rie, Maroc},
	Pages = {451-456},
	Series = {TAMTAM'11},
	Title = {Analyse d'une relation syntrophique : cas d'un chemostat},
	Year = {2011}}

@inproceedings{Proc51,
	Aeres = {C-ACTI},
	Author = {Fekih Salem, R. and Abdellatif, N. and Sari, T. and Harmand, J.},
	Booktitle = {5{\`e}me Colloque sur les Tendances dans les Applications Math{\'e}matiques en Tunisie, Alg{\'e}rie, Maroc},
	Pages = {457-463},
	Title = {Sur un mod{\`e}le de digestion anar{\'e}obie avec d{\'e}gradation enzymatique du substart sous forme solide},
	Year = {2011}}

@inproceedings{Proc52,
	Aeres = {C-ACTI},
	Author = {Fekih Salem, R. and Abdellatif, N. and Sari, T. and Harmand, J.},
	Booktitle = {Mathmod 2012 : 7. Vienna conference on mathematical modelling},
	Pages = {671--676},
	Series = {Minisymposia Mathematical modelling and control fo bio-chemical processes},
	Title = {On a three step model of anaerobic digestion including the hydrolysis of particulate matter},
	Year = {2012}}

@inproceedings{Proc53,
	Aeres = {C-ACTI},
	Author = {Fekih Salem, R. and Sari, T. and Abdellatif, N.},
	Booktitle = {10th Colloque Africain sur la Recherche en Informatique et en Math{\'e}matiques Appliqu{\'e}es (CARI'10), E. Badouel, A. Sbihi and I. Lokpo (Editors), INRIA},
	Pages = {437--444},
	Title = {Sur un mod{\`e}le de comp{\'e}tition et de coexistence dans le chemostat},
	Url = {http://intranet.inria.fr/international/arima/014/014002.html},
	Year = {2010},
	Bdsk-Url-1 = {http://intranet.inria.fr/international/arima/014/014002.html}}

@inproceedings{Proc54,
	Aeres = {C-ACTI},
	Author = {Fekih Salem, R. and Sari, T. and Rapaport, A.},
	Booktitle = {5{\`e}me Colloque sur les Tendances dans les Applications Math{\'e}matiques en Tunisie, Alg{\'e}rie, Maroc},
	Pages = {477-483},
	Title = {La floculation et la coexistence dans le chemostat},
	Year = {2011}}

@inproceedings{Draft6,
	Aeres = {C-ACTN},
	Author = {Brighi, B. and Fruchard, A. and Sari, T.},
	Booktitle = {Colloque {\`a} la m{\'e}moire de E. Isambert, Philosophie, m{\'e}thodologie et applications de l'analyse non standard, U. Paris 13},
	Pages = {105--123},
	Title = {The {B}lasius equation},
	Year = {2010}}

@inproceedings{Proc55,
	Aeres = {C-COM},
	Author = {Gajardo, P. and Ramirez, H. and Riquelme, V. and Rapaport, A.},
	Booktitle = {International Symposium on Mathematical and Computational Biology},
	Title = {Bioremediation of natural water resources via optimal control techniques},
	Year = {2011}}

@inproceedings{Proc70,
	Aeres = {C-COM},
	Author = {Harmand, J. and Rapaport, A. and El Hajji, M.},
	Booktitle = {First Franco-Chilean Workshop on Bioprocess Modeling},
	Title = {The growth of soil bacteria revisited},
	Year = {2010}}

@inproceedings{Proc79,
	Aeres = {C-ACTN},
	Author = {Lobry, C. and Sari, T.},
	Booktitle = {Colloque {\`a} la m{\'e}moire de E. Isambert, Philosophie, m{\'e}thodologie et applications de l'analyse non standard, U. Paris 13},
	Pages = {163-184},
	Title = {La mod{\'e}lisation de la persistance en {\'e}cologie},
	Year = {2012}}

@inproceedings{Proc98,
	Aeres = {C-COM},
	Author = {Rapaport, A.},
	Booktitle = {S{\'e}minaire de l'Equipe ACSIOM Programme 2010 - 2011},
	Title = {Quelques EDP en mod{\'e}lisation, commande et conception d'{\'e}cosyst{\`e}mes microbiens et bioproc{\'e}d{\'e}s},
	Year = {2011}}

@inproceedings{Proc99,
	Aeres = {C-COM},
	Author = {Rapaport, A.},
	Booktitle = {Workshop on Applied and Numerical Optimal Control (ANOC), Paris},
	Title = {Singular arcs issues in minimal time problems for some fed-batch processes},
	Year = {2012}}

@inproceedings{Proc100,
	Aeres = {C-COM},
	Author = {Rapaport, A.},
	Booktitle = {S{\'e}minaire Avignon-Montpellier d'Optimisation, Contr{\^o}le et Dynamique (SAMOCOD)},
	Title = {A propos de commande de syst{\`e}mes dynamiques vers un extremum d'une fonction de sortie mal connue et applications},
	Year = {2013}}

@inproceedings{Proc101,
	Aeres = {C-COM},
	Author = {Rapaport, A.},
	Booktitle = {GDRE ConEDP Meeting 2013 : Modeling and control of systems: applications to nano-sciences, environment and energy},
	Title = {Some Control and Optimization Problems for the Biological Wastewater treatment},
	Year = {2013}}

@inproceedings{Proc102,
	Aeres = {C-ACTI},
	Author = {Rapaport, A. and Dochain, D.},
	Booktitle = {11. CAB 2010 : IFAC International Symposium on Computer Applications in Biotechnology},
	Pages = {6 p.},
	Title = {Minimal time control of fed-batch processes with growth functions having several maxima},
	Year = {2010}}

@inproceedings{Proc103,
	Aeres = {C-COM},
	Author = {Rapaport, A. and Dochain, D.},
	Booktitle = {Latin American Workshop on Optimization and Control},
	Title = {Minimal time control of fed-batch processes for growth functions having several maxima},
	Year = {2012}}

@inproceedings{Proc106,
	Aeres = {C-ACTI},
	Author = {Rapaport, A. and El Hajji, M.},
	Booktitle = {11. CAB 2010 : IFAC International Symposium on Computer Applications in Biotechnology},
	Pages = {6 p.},
	Series = {Computer Applications in Biotechnology},
	Title = {Design of a Cascade Observer for a Model of Bacterial Batch Culture with Nutrient Recycling},
	Year = {2010}}

@inproceedings{Proc107,
	Aeres = {C-COM},
	Author = {Rapaport, A. and El Hajji, M. and Harmand, J.},
	Booktitle = {First Franco-Chilean Workshop on Bioprocess Modeling},
	Title = {Design of a cascade observer for a model of bacterial batch culture with nutrient recycling},
	Year = {2010}}

@inproceedings{Proc108,
	Aeres = {C-COM},
	Author = {Rapaport, A. and Harmand, J. and Godon, J.-J.},
	Booktitle = {Colloque Ecologie, Montpellier},
	Title = {Comment la diversit{\'e} permet une coexistence pratique d'esp{\`e}ces en comp{\'e}tition sur un substrat en accord avec le principe d'exclusion comp{\'e}titive?},
	Year = {2010}}

@inproceedings{Proc110,
	Aeres = {C-ACTI},
	Author = {Saddoud, A. and Sari, T. and Rapaport, A. and Lortie, R. and Harmand, J. and Dubreucq, E.},
	Booktitle = {11. CAB 2010 : IFAC International Symposium on Computer Applications in Biotechnology},
	Pages = {6 p.},
	Series = {Computer Applications in Biotechnology},
	Title = {A Mathematical Study of an Enzymatic Reaction in Non Homogeneous Reactors with Substrate and Product Inhibition: Application to Cellobiose Hydrolysis in a Bioreactor with a Dead-Zone},
	Year = {2010}}

@inproceedings{Proc111,
	Aeres = {C-COM},
	Author = {Sari, T.},
	Booktitle = {3th Latin American Workshop on Optimization and Control (LAWOC2012)},
	Title = {Extension of the Chemostat model with flocculation},
	Year = {2012}}

@inproceedings{Proc112,
	Aeres = {C-ACTI},
	Author = {Sari, T. and Abdellatif, N. and Benyahia, B. and Diagne, M. L. and El Hajji, M. and Fekih Salem, R.},
	Booktitle = {5{\`e}me Colloque sur les Tendances dans les Applications Math{\'e}matiques en Tunisie, Alg{\'e}rie, Maroc},
	Pages = {19-25},
	Title = {Mod{\'e}lisation math{\'e}matique en biologie : comp{\'e}tition, coexistence et croissance},
	Year = {2011}}

@inproceedings{Proc114,
	Aeres = {C-ACTI},
	Author = {Sieber, J. and Rapaport, A. and Rodrigues, S. and Desroches, M.},
	Booktitle = {20th IEEE Mediterranean Conference on Control and Automation (MED '12)},
	Editor = {IEEE},
	Pages = {169--175},
	Series = {IEEE Xplore},
	Title = {A new method for the reconstruction of unknown non-monotonic growth function in the chemostat},
	Year = {2012}}

@inproceedings{Proc122,
	Aeres = {C-ACTI},
	Author = {Fekih Salem, R. and Abdellatif, N. and Sari, T. and Harmand J.},
	Booktitle = {CARI'12, Proceedings of the 11th African Conference on Research in Computer Science and Applied Mathematics, Algeria},
	Pages = {459--466},
	Title = {Analyse math{\'e}matique d'un mod{\`e}le de digestion ana{\'e}robie {\`a} trois {\'e}tapes},
	Year = {2012}}

@inproceedings{Proc123,
	Aeres = {C-COM},
	Author = {Fekih Salem, R. and Abdellatif, N. and Sari, T. and Harmand J.},
	Booktitle = {International Joint Conference CB-WR-MED Conference/ 2nd AOP' Tunisia Conference for Sustainable Water Management. Tunis},
	Pages = {93--94},
	Title = {Qualitative properties of 3-step model of anaerobic digestion including hydrolysis of particulate matter},
	Year = {2013}}

@inproceedings{Proc124,
	Aeres = {C-ACTI},
	Author = {Tapia, E. and Donoso-Bravo, A. and Cabrol, L. and Alves, M. and Pereira, A. and Rapaport, A. and Ruiz-Filippi, G.},
	Booktitle = {13th IWA World Congress on Anaerobic Digestion, Santiago de Compostela (Spain)},
	Title = {A methodology for coupling DGGE and mathematical modelling: Application in bio-hydrogen production},
	Year = {2013}}

@inproceedings{Proc125,
	Aeres = {C-COM},
	Author = {Rapaport, A.},
	Booktitle = {The SIAM Conference on Control and Applications (CT13), San Diego, July},
	Title = {Chemostat stabilisation through delayed buffering},
	Year = {2013}}

@inproceedings{Proc126,
	Aeres = {C-ACTI},
	Author = {Bayen, T. and Mairet, F. and Mazade, M.},
	Booktitle = {9th IFAC Symposium on Nonlinear Control Systems (NOLCOS)},
	Title = {Fed-batch bioreactor with mortality rate},
	Year = {2013}}

@inproceedings{Proc127,
	Aeres = {C-ACTI},
	Author = {Bayen, T. and Mairet, F. and Martinon, P. and Sebbah, M.},
	Booktitle = {ECC13 : European Control Conference},
	Title = {Fed-batch bioreactor with mortality rate},
	Year = {2013}}

@inproceedings{Proc128,
	Aeres = {C-ACTI},
	Author = {Bayen, T. and Silva, F.},
	Booktitle = {First IFAC Workshop on Control of Systems Modeled by Partial Differential Equations (CPDE 2013)},
	Title = {Weak and strong minima : from calculus of variation toward {PDE} optimization},
	Year = {2013}}

@inproceedings{Proc129,
	Aeres = {C-ACTI},
	Author = {Rapaport, A. and Sieber, J. and Rodrigues, S. and Desroches, M.},
	Booktitle = {9th IFAC Symposium on Nonlinear Control Systems (NOLCOS)},
	Title = {Extremum Seeking Via Continuation Techniques for Optimizing Biogas Production in the Chemostat},
	Year = {2013}}

@inproceedings{Proc130,
	Aeres = {C-ACTI},
	Author = {Rapaport, A. and Haidar, I. and Harmand, J.},
	Booktitle = {9th IFAC Symposium on Nonlinear Control Systems (NOLCOS)},
	Title = {The Buffered Chemostat with Non-Monotonic Response Functions},
	Year = {2013}}

@inproceedings{Proc131,
	Aeres = {C-ACTI},
	Author = {Bouhafs, W. and Abdellatif, N. and Jean, F. and Harmand, J.},
	Booktitle = {CARI'12, Proceedings of the 11th African Conference on Research in Computer Science and Applied Mathematics, Algeria, October, 13-16},
	Title = {Commande optimale en temps minimal d'un proc{\'e}d{\'e} biologique d'{\'e}puration de l'eau},
	Year = {2012}}

@inproceedings{Proc132,
	Aeres = {C-ACTI},
	Author = {Bouhafs, W. and Abdellatif, N. and Jean, F. and Harmand, J.},
	Booktitle = {Proceedings of the International Joint Conference CB-WR-MED Conference/ 2nd AOP' Tunisia Conference for Sustainable Water Management. Tunis: April, 24--27,},
	Pages = {93--94},
	Title = {Commande optimale en temps minimal d'un proc{\'e}d{\'e} biologique d'{\'e}puration de l'eau},
	Year = {2013}}

@inproceedings{Proc133,
	Aeres = {C-ACTI},
	Author = {Ghouali, A. and Harmand, J. and Rapaport, A. and Moussaoui, A. and Cherki, B. and Sari, T.},
	Booktitle = {CARI'12, Proceedings of the 11th African Conference on Research in Computer Science and Applied Mathematics, Algeria, October, 13-16},
	Title = {Contr{\^o}le optimal d'un bior{\'e}acteur de d{\'e}pollution des eaux us{\'e}es},
	Year = {2012}}

@inproceedings{Proc134,
	Aeres = {C-ACTI},
	Author = {Campillo, F. and Champagnat, N.},
	Booktitle = {MAMERN11: 4th International Conference on Approximation Methods and Numerical Modelling in Environment and Natural Resources Saidia (Morocco) May 23-26},
	Title = {An individual-based model for clonal plant dynamics},
	Year = {2011}}

@inproceedings{Proc135,
	Aeres = {C-COM},
	Author = {Campillo, F. and Joannides, M. and Larramendy, I.},
	Booktitle = {{15th Applied Stochastic Models and Data Analysis International Conference (ASMDA 2013), June 25--28}},
	Title = {Stochastic models for the chemostat at different scales},
	Year = {2013}}
		 
		 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
		 
		 
%%%%%%%%%%%%%%%%%% Reports
		 
		 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%		 
		 

@techreport{Report2,
	Aeres = {AP},
	Author = {Campillo, F. and Herv{\'e}, D. and Raherinirina, A. and Rakotozafy, R.},
	Date-Modified = {2013-09-04 07:39:05 +0000},
	Number = {7670},
	Title = {A {Markov} model of land use dynamics},
	Type = {Rapport de recherche INRIA},
	Year = {2011}}

@techreport{Report3,
	Aeres = {AP},
	Author = {Campillo, F. and Joannides, M. and Larramendy-Valverde, I.},
	Number = {7458},
	Title = {Stochastic models for the chemostat},
	Type = {Rapport de recherche INRIA},
	Year = {2010}}

@techreport{Report4,
	Aeres = {AP},
	Author = {Casenave, C. and Dochain, D.},
	Note = {Funding: UE, 7th PCRD},
	Title = {European project {CAFE} {WP7}: Process monitoring and control - Deliverable 7.2: Full-scale performance of the control laws in different product manufacturing end users},
	Type = {Contrat report},
	Year = {2013}}

@techreport{Report5,
	Aeres = {AP},
	Author = {Casenave, C. and Trelea, C. and Mouret, J.-R. and Sablayrolles, J.-M. and Passot, S. and Perret, B. and Fonseca, F. and Vilas, C. and Benkhelifa, H. and Leducq, D. and Alvarez, G. and Eisner-Schadler, V. and Kramer, J. and Togtema, A. and Grushkin, Y. and van der Sman, R. and Vollebregt , M.},
	Note = {Funding: UE, 7th PCRD},
	Title = {European project {CAFE} {WP3}: Process experiments - Deliverable 3.3: Test of optimal control strategies},
	Type = {Contrat report},
	Year = {2013}}

@techreport{Report9,
	Aeres = {AP},
	Author = {Rapaport, A.},
	Title = {{Rapport T0+06 ANR SYSCOMM DISCO}},
	Year = {2010}}

@techreport{Report10,
	Aeres = {AP},
	Author = {Rapaport, A.},
	Title = {Proposal of INRIA team MODEMIC Modelling and Optimisation of the Dynamics of Ecosystems with MICro-organisms},
	Year = {2011}}

@techreport{Report11,
	Aeres = {AP},
	Author = {Rapaport, A.},
	Title = {{Rapport mi-parcours ANR SYSCOMM DISCO}},
	Year = {2011}}

@techreport{Report12,
	Aeres = {AP},
	Author = {Rapaport, A.},
	Title = {{Rapport T0+30 ANR SYSCOMM DISCO}},
	Year = {2012}}

@techreport{Report13,
	Aeres = {AP},
	Author = {Rapaport, A. and Auger, P. and Gensel, J. and Labiod, H. and Sebag, M.},
	Title = {Mod{\`e}les, syst{\`e}mes d'information et gestion viable De l'environnement ({MOTIVE}) d'{IRSTEA}},
	Type = {Rapport du comit{\'e} de visite de l'{AERES}},
	Year = {2012}}

@techreport{Report15,
	Aeres = {AP},
	Author = {van der Sman, R. and Vollebregt, M. and David, R. and Dochain, D. and Flick, D. and Benkhelifa, H. and Gonzalez-Ramirez, J. E. and Leducq, D. and Alvarez, G. and Arellano, S. and Trelea, C. and Douania, I. and Passot, S. and Fonseca, F. and Vilas, C. and L{\'o}pez-Quiroga, E. and Alonso, A. A. and Binns, M. and Xie, W. and Theodoropoulos, C. and Casenave, C.},
	Note = {Funding: UE, 7th PCRD},
	Title = {European project {CAFE} {WP4}: Model reduction, validation and simulation - Deliverable 4.2: Portable and documented simulation software for each demonstration process},
	Type = {Contrat report},
	Year = {2013}}
		 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
		 
		 
%%%%%%%%%%%%%%%%%% misc
		 
		 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%		 		 
		 

@misc{Misc8,
	Aeres = {AP},
	Author = {Campillo, F. and Champagnat, N.},
	Date-Modified = {2013-09-04 07:41:44 +0000},
	Title = {{IBM} of clonal plant dynamics (simulation software)},
	Url = {http://www-sop.inria.fr/members/Fabien.Campillo/software/ibm-clonal/},
	Year = {2012}}

@misc{Misc19,
	Aeres = {BRE},
	Author = {Loisel, P. and Haegeman, B. and Hamelin, J. and Harmand, J. and Godon, J.-J.},
	Isbn = {EP 2 203 744 B1},
	Month = {Patent EP 2 203 744 B1},
	Number = {08843131.7},
	Pages = {42 p.},
	Title = {A method for measuring the biological diversity of a sample},
	Year = {2011}}

@misc{Misc22,
	Aeres = {AP},
	Author = {Rapaport, A. and Harmand, J. and Auffray, V. and Houl{\`e}s, V. and Jallas, E. and Ricordeau, M. and Mirman, F.},
	Title = {{VITELBIO} (web service)},
	Url = {http://vitelbio.itkweb.fr/},
	Year = {2010},
	Bdsk-Url-1 = {http://vitelbio.itkweb.fr/}}

@misc{Inbook5,
	Aeres = {ASCL},
	Author = {Rapaport, A. and Terreaux, J.-P.},
	Series = {Math{\'e}matiques de la Plan{\`e}te Terre : un jour, une br{\`e}ve. Blog fran{\c c}ais de l'initiative internationale},
	Title = {Cigale ou fourmi ? Quand la programmation dynamique guide nos d{\'e}cisions},
	Year = {2013}}

@misc{Misc27,
	Aeres = {BRE},
	Author = {A. Rapaport and Harmand, J. and Haidar, I.},
	Month = {February},
	Note = {Brevet INRA-U. Montpellier II BNT 2100 61 FR 00},
	Title = {Stabilisation de proc{\'e}d{\'e}s biotechnologiques pr{\'e}sentant une instabilit{\'e} due {\`a} une inhibition par le substrat, par des configurations de type "poche"},
	Year = {2012}}

@misc{Misc28,
	Aeres = {BRE},
	Author = {Rapaport, A. and Rousseau, A. and Harmand, J.},
	Month = {June},
	Note = {Brevet INRA-INRIA EBE-EG BFF 13P0171 - FR 13 55129},
	Title = {Proc{\'e}d{\'e} de traitement d'une ressource fluide, programme d'ordinateur et module de traitement associ{\'e}s},
	Year = {2013}}
		 
		 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
		 
		 
%%%%%%%%%%%%%%%%%% PhD theses
		 
		 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%		 		 
		 

@phdthesis{These5,
	Aeres = {THE},
	Author = {El Hajji, M.},
	School = {Universit{\'e} Montpellier II},
	Title = {Mod{\'e}lisation et analyse math{\'e}matique pour les {\'e}cosyst{\`e}mes microbiens - approche par les syst{\`e}mes dynamiques},
	Year = {2010}}

@phdthesis{These6,
	Aeres = {THE},
	Author = {Haidar, I.},
	School = {Universit{\'e} Montpellier II},
	Title = {Dynamiques microbiennes et mod{\'e}lisation des cycles biochimiques terrestres},
	Year = {2011}}

@phdthesis{These20,
	Aeres = {THE},
	Author = {Benyahia, B.},
	School = {Universit{\'e} Montpellier II et Universit{\'e} de Tlemecen (Alg{\'e}rie)},
	Title = {Mod{\'e}lisation et observation des bioproc{\'e}d{\'e}s {\`a} membranes : application {\`a} la digestion ana{\'e}robie},
	Year = {2012}}

@phdthesis{These21,
	Aeres = {THE},
	Author = {Fekih Salem, R.},
	School = {Universit{\'e} Montpellier II et Universit{\'e} de Tunis (Tunisia)},
	Title = {Mod{\`e}les math{\'e}matiques pour la comp{\'e}tition et la coexistence des esp{\`e}ces microbiennes dans un ch{\'e}mostat},
	Year = {2013}}

@phdthesis{These22,
	Aeres = {THE},
	Author = {Mabrouk, N.},
	School = {Universit{\'e} Clermont-Ferrand},
	Title = {Analyzing individual-based models of microbial systems},
	Year = {2010}}
		 
@phdthesis{These23,
	Author = {A. Raherinirina},
	Date-Added = {2013-09-04 07:34:22 +0000},
	Date-Modified = {2013-09-04 07:40:44 +0000},
	School = {Universi\'e de Fianarantsoa},
	Title = {Mod{\'e}lisation markovienne des dynamiques d'usage des sols},
	Year = {2013}}		 
		 
		 
		 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
		 
		 
%%%%%%%%%%%%%%%%%% Master theses
		 
		 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%		 

@mastersthesis{Memoire7,
	Aeres = {THE},
	Author = {Rojas-Palma, A.},
	Month = {November},
	School = {Catholic University of Valparaiso, Chile},
	Title = {Comparison of {MINC} and {MRMT} configurations: the n-dimensional case},
	Type = {{MSc Engineeing Mathematics report}},
	Year = {2012}}

@mastersthesis{Memoire8,
	Aeres = {THE},
	Author = {Barbier, S.},
	Month = {September},
	School = {Universit{\'e} de Reims Champagne-Ardennes},
	Title = {Mod\'elisation de strat\'egies de d\'epollution d'une ressource hydrique en milieu naturel},
	Type = {Master {M2} d'Ing{\'e}ni{\'e}rie math{\'e}matique},
	Year = {2012}}

@mastersthesis{Memoire9,
	Aeres = {THE},
	Author = {Riqueleme, V.},
	School = {Departamento de Ingenieria Matematica, Univ. Chile, Santiago},
	Title = {Bioremediation of natural water resources via optimal control techniques},
	Type = {{MSc Engineeing Mathematics report}},
	Year = {2011}}

@mastersthesis{Memoire16,
	Aeres = {THE},
	Author = {Resnais, G.},
	School = {Institut National des Sciences appliqu{\'e}es de Toulouse},
	Title = {Mod{\'e}lisation de la biod{\'e}gradation des carbone et nitrate en tubes PVC avec pr{\'e}sence de biofilms},
	Type = {M{\'e}moire de stage de 4{\`e}me ann{\'e}e},
	Year = {2010}}

@mastersthesis{Memoire17,
	Aeres = {THE},
	Author = {Bello Rivas, J.},
	School = {Universidad Complutense de Madrid (Spain)},
	Title = {Optimal design of dispersive bioreactors for wastewater treatment},
	Type = {{MSc Engineeing Mathematics report}},
	Year = {2010}}

@mastersthesis{Memoire18,
	Aeres = {THE},
	Author = {Zhong, L. Y.},
	School = {Institut National des Sciences appliqu{\'e}es de Lyon},
	Title = {Mod{\'e}lisation d'oscillations dans la croissance de levures en ch{\'e}mostat},
	Type = {M{\'e}moire de stage de 4{\`e}me ann{\'e}e},
	Year = {2011}}

@mastersthesis{Memoire19,
	Aeres = {THE},
	Author = {Dayle, F.},
	School = {U. Montpellier II},
	Title = {Mod{\`e}les probabilistes d'assemblage d'esp{\`e}ces, sous contrainte de r{\`e}gles},
	Type = {M{\'e}moire de stage de {M}aster {M1}, Ecologie fonctionnelle et d{\'e}veloppement durable},
	Year = {2011}}
